Index A | C | F | I | M | N | P | R | S | U | V | W A add_data_from_adata() (SCOTCH.SCOTCH method) add_data_from_file() (SCOTCH.SCOTCH method) add_scotch_embeddings_to_adata() (SCOTCH.SCOTCH method) assign_cluster() (NMTF.NMTF method) assign_X_data() (NMTF.NMTF method) C combined_embedding_visualization() (SCOTCH.SCOTCH method) combined_enrichment_visualization() (SCOTCH.SCOTCH method) F fit() (NMTF.NMTF method) I initialize module M make_adata_from_scotch() (SCOTCH.SCOTCH method) make_top_regulators_list() (SCOTCH.SCOTCH method) module initialize NMTF SCOTCH N NMTF module NMTF (class in NMTF) nnsvd_nmf_initialize() (in module initialize) nnsvd_nmtf_initialize() (in module initialize) P plot_cooccurrence_proportions() (SCOTCH.SCOTCH method) plot_element_count_heatmap() (SCOTCH.SCOTCH method) plot_reconstruction_error() (SCOTCH.SCOTCH method) plot_S_matrix() (SCOTCH.SCOTCH method) print_output() (NMTF.NMTF method) print_USV() (NMTF.NMTF method) R recluster_V() (NMTF.NMTF method) run_enrich_analyzer() (SCOTCH.SCOTCH method) S save_cluster() (NMTF.NMTF method) SCOTCH module SCOTCH (class in SCOTCH) send_to_cpu() (NMTF.NMTF method) send_to_gpu() (NMTF.NMTF method) U update() (NMTF.NMTF method) update_unit() (NMTF.NMTF method) V visualize_clusters() (NMTF.NMTF method) visualize_clusters_sorted() (NMTF.NMTF method) visualize_enrichment_bubbleplots() (SCOTCH.SCOTCH method) visualize_factors() (NMTF.NMTF method) visualize_factors_sorted() (NMTF.NMTF method) visualize_marker_gene_bubbleplot_per_cell_cluster() (SCOTCH.SCOTCH method) visualize_marker_gene_bubbleplot_per_gene_cluster() (SCOTCH.SCOTCH method) W write_gif() (NMTF.NMTF method)